Detailed information of SNP:
|
SNP ID:
sf0119913620(Gbrowse)
Chromosome: chr01 Position: 19913620 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.62% | 26.38% |
| All Indica | 798 | 58.27% | 41.73% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 49.60% | 50.40% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 210 | 67.62% | 32.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119913620 | G->A | INTERGENIC | None |