Detailed information of SNP:
|
SNP ID:
sf0119920778(Gbrowse)
Chromosome: chr01 Position: 19920778 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 68.71% | 31.29% |
| All Indica | 799 | 50.69% | 49.31% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 46.93% | 53.07% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119920778 | C->G | INTERGENIC | None |