Detailed information of SNP:
|
SNP ID:
sf0119923717(Gbrowse)
Chromosome: chr01 Position: 19923717 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 87.33% | 12.67% |
| All Indica | 762 | 78.08% | 21.92% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 345 | 76.52% | 23.48% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 204 | 66.67% | 33.33% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119923717 | C->T | LOC_Os01g36000(LOC_Os01g36000.1) | Synonymous |