Detailed information of SNP:
|
SNP ID:
sf0119925167(Gbrowse)
Chromosome: chr01 Position: 19925167 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1310 | 77.94% | 22.06% |
| All Indica | 698 | 64.18% | 35.82% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 65 | 56.92% | 43.08% |
| Indica I | 329 | 60.18% | 39.82% |
| Indica II | 195 | 85.13% | 14.87% |
| Indica Intermediate | 174 | 48.28% | 51.72% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119925167 | T->C | LOC_Os01g36010(LOC_Os01g36010.1) | Non-Synonymous SNP |