Detailed information of SNP:
|
SNP ID:
sf0119928619(Gbrowse)
Chromosome: chr01 Position: 19928619 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 71.00% | 29.00% |
| All Indica | 799 | 50.44% | 49.56% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 46.40% | 53.60% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119928619 | T->C | LOC_Os01g36020(LOC_Os01g36020.1) | Non-Synonymous SNP |