Detailed information of SNP:
|
SNP ID:
sf0119928796(Gbrowse)
Chromosome: chr01 Position: 19928796 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1322 | 87.52% | 12.48% |
| All Indica | 708 | 77.40% | 22.60% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 328 | 75.00% | 25.00% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 171 | 63.74% | 36.26% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119928796 | G->A | LOC_Os01g36020(LOC_Os01g36020.1) | Synonymous |