Detailed information of SNP:
|
SNP ID:
sf0119953302(Gbrowse)
Chromosome: chr01 Position: 19953302 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 95.16% | 4.84% |
| All Indica | 786 | 91.35% | 8.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 89.67% | 10.33% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0119953302 | C->T | LOC_Os01g36060(LOC_Os01g36060.1) | Synonymous |