Detailed information of SNP:
|
SNP ID:
sf0120089749(Gbrowse)
Chromosome: chr01 Position: 20089749 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 91.92% | 8.08% |
| All Indica | 790 | 99.37% | 0.63% |
| All Japonica | 487 | 78.64% | 21.36% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 205 | 99.51% | 0.49% |
| Temperate Japonica | 329 | 72.34% | 27.66% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120089749 | T->A | INTERGENIC | None |