Detailed information of SNP:
|
SNP ID:
sf0120187523(Gbrowse)
Chromosome: chr01 Position: 20187523 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 90.43% | 9.57% |
| All Indica | 760 | 84.47% | 15.53% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 348 | 83.33% | 16.67% |
| Indica II | 206 | 81.07% | 18.93% |
| Indica Intermediate | 206 | 89.81% | 10.19% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120187523 | A->G | LOC_Os01g36380(LOC_Os01g36380.1) | Synonymous |