Detailed information of SNP:
|
SNP ID:
sf0120401088(Gbrowse)
Chromosome: chr01 Position: 20401088 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 62.91% | 37.09% |
| All Indica | 798 | 36.84% | 63.16% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 12.00% | 88.00% |
| Indica II | 213 | 50.70% | 49.30% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120401088 | A->G | INTERGENIC | None |