Detailed information of SNP:
|
SNP ID:
sf0120411830(Gbrowse)
Chromosome: chr01 Position: 20411830 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 92.98% | 7.02% |
| All Indica | 788 | 99.87% | 0.13% |
| All Japonica | 472 | 80.51% | 19.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 317 | 72.56% | 27.44% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120411830 | T->A | INTERGENIC | None |