Detailed information of SNP:
|
SNP ID:
sf0120416131(Gbrowse)
Chromosome: chr01 Position: 20416131 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1160 | 93.02% | 6.98% |
| All Indica | 715 | 100.00% | 0.00% |
| All Japonica | 337 | 77.74% | 22.26% |
| Aus | 59 | 100.00% | 0.00% |
| Indica I | 367 | 100.00% | 0.00% |
| Indica II | 180 | 100.00% | 0.00% |
| Indica Intermediate | 168 | 100.00% | 0.00% |
| Temperate Japonica | 227 | 70.04% | 29.96% |
| Tropical Japonica | 65 | 100.00% | 0.00% |
| Japonica Intermediate | 45 | 84.44% | 15.56% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 35 | 88.57% | 11.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120416131 | T->C | INTERGENIC | None |