Detailed information of SNP:
|
SNP ID:
sf0120456607(Gbrowse)
Chromosome: chr01 Position: 20456607 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 65.61% | 34.39% |
| All Indica | 798 | 40.85% | 59.15% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 11.73% | 88.27% |
| Indica II | 212 | 66.51% | 33.49% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120456607 | G->A | INTERGENIC | None |