Detailed information of SNP:
|
SNP ID:
sf0120460231(Gbrowse)
Chromosome: chr01 Position: 20460231 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 70.32% | 29.68% |
| All Indica | 795 | 48.18% | 51.82% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 22.73% | 77.27% |
| Indica II | 212 | 69.34% | 30.66% |
| Indica Intermediate | 209 | 72.25% | 27.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120460231 | G->A | INTERGENIC | None |