Detailed information of SNP:
|
SNP ID:
sf0120469582(Gbrowse)
Chromosome: chr01 Position: 20469582 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 70.03% | 29.97% |
| All Indica | 792 | 47.85% | 52.15% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 372 | 23.39% | 76.61% |
| Indica II | 211 | 69.67% | 30.33% |
| Indica Intermediate | 209 | 69.38% | 30.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120469582 | C->T | INTERGENIC | None |