Detailed information of SNP:



SNP ID: sf0120477667(Gbrowse)

Chromosome: chr01

Position: 20477667
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1408 66.69% 33.31%
All Indica794 41.94% 58.06%
All Japonica497 100.00% 0.00%
Aus63 98.41% 1.59%
Indica I373 12.87% 87.13%
Indica II212 67.45% 32.55%
Indica Intermediate209 67.94% 32.06%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 82.50% 17.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0120477667 C->T INTERGENIC None