Detailed information of SNP:
|
SNP ID:
sf0120477667(Gbrowse)
Chromosome: chr01 Position: 20477667 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 66.69% | 33.31% |
| All Indica | 794 | 41.94% | 58.06% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 373 | 12.87% | 87.13% |
| Indica II | 212 | 67.45% | 32.55% |
| Indica Intermediate | 209 | 67.94% | 32.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120477667 | C->T | INTERGENIC | None |