Detailed information of SNP:
|
SNP ID:
sf0120650079(Gbrowse)
Chromosome: chr01 Position: 20650079 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 65.56% | 34.44% |
| All Indica | 797 | 40.65% | 59.35% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 19.25% | 80.75% |
| Indica II | 212 | 50.94% | 49.06% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120650079 | C->T | INTERGENIC | None |