Detailed information of SNP:
|
SNP ID:
sf0120764702(Gbrowse)
Chromosome: chr01 Position: 20764702 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 97.50% | 2.50% |
| All Indica | 781 | 96.29% | 3.71% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 98.09% | 1.91% |
| Indica II | 207 | 92.27% | 7.73% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120764702 | T->C | INTERGENIC | None |