Detailed information of SNP:
|
SNP ID:
sf0120772711(Gbrowse)
Chromosome: chr01 Position: 20772711 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1371 | 92.27% | 7.73% |
| All Indica | 755 | 87.42% | 12.58% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 356 | 87.92% | 12.08% |
| Indica II | 203 | 86.70% | 13.30% |
| Indica Intermediate | 196 | 87.24% | 12.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120772711 | A->C | INTERGENIC | None |