Detailed information of SNP:
|
SNP ID:
sf0120797237(Gbrowse)
Chromosome: chr01 Position: 20797237 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 97.72% | 2.28% |
| All Indica | 787 | 96.32% | 3.68% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 369 | 95.39% | 4.61% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120797237 | G->A | LOC_Os01g37240(LOC_Os01g37240.1) | Non-Synonymous SNP |