Detailed information of SNP:
|
SNP ID:
sf0120817824(Gbrowse)
Chromosome: chr01 Position: 20817824 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 95.84% | 4.16% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120817824 | C->T | LOC_Os01g37280(LOC_Os01g37280.2) | UTR_3_PRIME |
| sf0120817824 | C->T | LOC_Os01g37280(LOC_Os01g37280.3) | UTR_3_PRIME |
| sf0120817824 | C->T | LOC_Os01g37280(LOC_Os01g37280.4) | INTRON |
| sf0120817824 | C->T | LOC_Os01g37280(LOC_Os01g37280.8) | INTRON |
| sf0120817824 | C->T | LOC_Os01g37280(LOC_Os01g37280.5) | INTRON |
| sf0120817824 | C->T | LOC_Os01g37280(LOC_Os01g37280.1) | UTR_3_PRIME |
| sf0120817824 | C->T | LOC_Os01g37280(LOC_Os01g37280.7) | INTRON |
| sf0120817824 | C->T | LOC_Os01g37280(LOC_Os01g37280.6) | INTRON |