Detailed information of SNP:
|
SNP ID:
sf0120868930(Gbrowse)
Chromosome: chr01 Position: 20868930 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1284 | 97.90% | 2.10% |
| All Indica | 733 | 99.86% | 0.14% |
| All Japonica | 434 | 94.47% | 5.53% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 340 | 100.00% | 0.00% |
| Indica II | 195 | 100.00% | 0.00% |
| Indica Intermediate | 198 | 99.49% | 0.51% |
| Temperate Japonica | 292 | 92.12% | 7.88% |
| Tropical Japonica | 83 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 98.31% | 1.69% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120868930 | G->A | LOC_Os01g37380(LOC_Os01g37380.1) | Synonymous |