Detailed information of SNP:
|
SNP ID:
sf0120872055(Gbrowse)
Chromosome: chr01 Position: 20872055 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 93.55% | 6.45% |
| All Indica | 776 | 89.18% | 10.82% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 90.16% | 9.84% |
| Indica II | 206 | 87.38% | 12.62% |
| Indica Intermediate | 204 | 89.22% | 10.78% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0120872055 | G->T | INTERGENIC | None |