Detailed information of SNP:
|
SNP ID:
sf0121060251(Gbrowse)
Chromosome: chr01 Position: 21060251 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1241 | 76.31% | 23.69% |
| All Indica | 623 | 54.41% | 45.59% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 249 | 32.93% | 67.07% |
| Indica II | 178 | 62.92% | 37.08% |
| Indica Intermediate | 196 | 73.98% | 26.02% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121060251 | G->T | INTERGENIC | None |