Detailed information of SNP:
|
SNP ID:
sf0121116219(Gbrowse)
Chromosome: chr01 Position: 21116219 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1149 | 64.49% | 35.51% |
| All Indica | 649 | 38.21% | 61.79% |
| All Japonica | 388 | 99.74% | 0.26% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 292 | 10.96% | 89.04% |
| Indica II | 181 | 54.70% | 45.30% |
| Indica Intermediate | 176 | 66.48% | 33.52% |
| Temperate Japonica | 268 | 100.00% | 0.00% |
| Tropical Japonica | 70 | 98.57% | 1.43% |
| Japonica Intermediate | 50 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121116219 | G->A | INTERGENIC | None |