Detailed information of SNP:
|
SNP ID:
sf0121203457(Gbrowse)
Chromosome: chr01 Position: 21203457 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 96.52% | 3.48% |
| All Indica | 792 | 94.82% | 5.18% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 206 | 94.66% | 5.34% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121203457 | G->A | INTERGENIC | None |