Detailed information of SNP:
|
SNP ID:
sf0121388850(Gbrowse)
Chromosome: chr01 Position: 21388850 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 56.93% | 43.07% |
| All Indica | 794 | 94.21% | 5.79% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 209 | 89.00% | 11.00% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121388850 | A->T | INTERGENIC | None |