Detailed information of SNP:
|
SNP ID:
sf0121398944(Gbrowse)
Chromosome: chr01 Position: 21398944 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 55.33% | 44.67% |
| All Indica | 788 | 88.71% | 11.29% |
| All Japonica | 490 | 2.04% | 97.96% |
| Aus | 63 | 68.25% | 31.75% |
| Indica I | 374 | 88.77% | 11.23% |
| Indica II | 207 | 88.41% | 11.59% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 333 | 0.90% | 99.10% |
| Tropical Japonica | 91 | 3.30% | 96.70% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121398944 | A->G | LOC_Os01g38200(LOC_Os01g38200.1) | Synonymous |