Detailed information of SNP:
|
SNP ID:
sf0121401784(Gbrowse)
Chromosome: chr01 Position: 21401784 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 55.07% | 44.93% |
| All Indica | 792 | 88.76% | 11.24% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 372 | 88.71% | 11.29% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121401784 | A->T | INTERGENIC | None |