Detailed information of SNP:
|
SNP ID:
sf0121418091(Gbrowse)
Chromosome: chr01 Position: 21418091 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 59.52% | 40.48% |
| All Indica | 792 | 93.81% | 6.19% |
| All Japonica | 491 | 2.44% | 97.56% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 86.12% | 13.88% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 329 | 3.04% | 96.96% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121418091 | T->C | LOC_Os01g38229(LOC_Os01g38229.4) | INTRON |
| sf0121418091 | T->C | LOC_Os01g38229(LOC_Os01g38229.2) | INTRON |
| sf0121418091 | T->C | LOC_Os01g38229(LOC_Os01g38229.1) | INTRON |
| sf0121418091 | T->C | LOC_Os01g38229(LOC_Os01g38229.3) | INTRON |