Detailed information of SNP:
|
SNP ID:
sf0121491474(Gbrowse)
Chromosome: chr01 Position: 21491474 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 82.95% | 17.05% |
| All Indica | 743 | 71.47% | 28.53% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 55 | 72.73% | 27.27% |
| Indica I | 351 | 77.49% | 22.51% |
| Indica II | 197 | 57.87% | 42.13% |
| Indica Intermediate | 195 | 74.36% | 25.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121491474 | T->A | INTERGENIC | None |