Detailed information of SNP:
|
SNP ID:
sf0121498793(Gbrowse)
Chromosome: chr01 Position: 21498793 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 94.31% | 5.69% |
| All Indica | 758 | 90.63% | 9.37% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 355 | 91.27% | 8.73% |
| Indica II | 204 | 91.18% | 8.82% |
| Indica Intermediate | 199 | 88.94% | 11.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121498793 | G->A | INTERGENIC | None |