Detailed information of SNP:
SNP ID:
sf0121509945(Gbrowse)
Chromosome: chr01 Position: 21509945 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1393 | 96.77% | 3.23% |
All Indica | 775 | 94.19% | 5.81% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 65 | 100.00% | 0.00% |
Indica I | 361 | 94.18% | 5.82% |
Indica II | 209 | 94.26% | 5.74% |
Indica Intermediate | 205 | 94.15% | 5.85% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0121509945 | T->C | INTERGENIC | None |