Detailed information of SNP:
|
SNP ID:
sf0121573306(Gbrowse)
Chromosome: chr01 Position: 21573306 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 98.83% | 1.17% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 447 | 96.64% | 3.36% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 301 | 95.68% | 4.32% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 96.55% | 3.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121573306 | G->T | INTERGENIC | None |