Detailed information of SNP:
|
SNP ID:
sf0121577861(Gbrowse)
Chromosome: chr01 Position: 21577861 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 94.76% | 5.24% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 494 | 86.23% | 13.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 92 | 38.04% | 61.96% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121577861 | C->T | INTERGENIC | None |