Detailed information of SNP:
|
SNP ID:
sf0121583705(Gbrowse)
Chromosome: chr01 Position: 21583705 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 96.45% | 3.55% |
| All Indica | 790 | 94.05% | 5.95% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 206 | 93.20% | 6.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121583705 | G->A | INTERGENIC | None |