Detailed information of SNP:
|
SNP ID:
sf0121585134(Gbrowse)
Chromosome: chr01 Position: 21585134 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 50.83% | 49.17% |
| All Indica | 774 | 83.59% | 16.41% |
| All Japonica | 495 | 1.41% | 98.59% |
| Aus | 64 | 59.38% | 40.62% |
| Indica I | 360 | 81.67% | 18.33% |
| Indica II | 208 | 87.98% | 12.02% |
| Indica Intermediate | 206 | 82.52% | 17.48% |
| Temperate Japonica | 333 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121585134 | T->A | LOC_Os01g38410(LOC_Os01g38410.1) | INTRON |