Detailed information of SNP:
|
SNP ID:
sf0121622865(Gbrowse)
Chromosome: chr01 Position: 21622865 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 55.29% | 44.71% |
| All Indica | 790 | 86.33% | 13.67% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 372 | 89.78% | 10.22% |
| Indica II | 210 | 84.76% | 15.24% |
| Indica Intermediate | 208 | 81.73% | 18.27% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121622865 | T->C | LOC_Os01g38480(LOC_Os01g38480.2) | UTR_3_PRIME |
| sf0121622865 | T->C | LOC_Os01g38480(LOC_Os01g38480.1) | UTR_3_PRIME |
| sf0121622865 | T->C | LOC_Os01g38480(LOC_Os01g38480.3) | UTR_3_PRIME |