Detailed information of SNP:
|
SNP ID:
sf0121622998(Gbrowse)
Chromosome: chr01 Position: 21622998 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 50.85% | 49.15% |
| All Indica | 787 | 17.92% | 82.08% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 369 | 7.05% | 92.95% |
| Indica II | 212 | 31.13% | 68.87% |
| Indica Intermediate | 206 | 23.79% | 76.21% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121622998 | A->G | LOC_Os01g38480(LOC_Os01g38480.2) | INTRON |
| sf0121622998 | A->G | LOC_Os01g38480(LOC_Os01g38480.1) | INTRON |
| sf0121622998 | A->G | LOC_Os01g38480(LOC_Os01g38480.3) | INTRON |