Detailed information of SNP:
|
SNP ID:
sf0121725918(Gbrowse)
Chromosome: chr01 Position: 21725918 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1303 | 67.15% | 32.85% |
| All Indica | 691 | 39.51% | 60.49% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 304 | 23.68% | 76.32% |
| Indica II | 187 | 35.83% | 64.17% |
| Indica Intermediate | 200 | 67.00% | 33.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121725918 | G->A | INTERGENIC | None |