Detailed information of SNP:
|
SNP ID:
sf0121826601(Gbrowse)
Chromosome: chr01 Position: 21826601 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 50.60% | 49.40% |
| All Indica | 790 | 84.68% | 15.32% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 207 | 58.94% | 41.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121826601 | A->G | INTERGENIC | None |