Detailed information of SNP:
|
SNP ID:
sf0121834756(Gbrowse)
Chromosome: chr01 Position: 21834756 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 52.59% | 47.41% |
| All Indica | 792 | 19.32% | 80.68% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 373 | 3.75% | 96.25% |
| Indica II | 211 | 30.33% | 69.67% |
| Indica Intermediate | 208 | 36.06% | 63.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121834756 | C->T | INTERGENIC | None |