Detailed information of SNP:
|
SNP ID:
sf0121834832(Gbrowse)
Chromosome: chr01 Position: 21834832 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 52.84% | 47.16% |
| All Indica | 794 | 19.90% | 80.10% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 75.81% | 24.19% |
| Indica I | 375 | 4.27% | 95.73% |
| Indica II | 211 | 31.28% | 68.72% |
| Indica Intermediate | 208 | 36.54% | 63.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121834832 | C->T | INTERGENIC | None |