Detailed information of SNP:
|
SNP ID:
sf0121860448(Gbrowse)
Chromosome: chr01 Position: 21860448 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 71.24% | 28.76% |
| All Indica | 779 | 50.83% | 49.17% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 367 | 44.96% | 55.04% |
| Indica II | 211 | 52.61% | 47.39% |
| Indica Intermediate | 201 | 59.70% | 40.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121860448 | C->T | INTERGENIC | None |