Detailed information of SNP:
|
SNP ID:
sf0121862123(Gbrowse)
Chromosome: chr01 Position: 21862123 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 91.37% | 8.63% |
| All Indica | 773 | 85.51% | 14.49% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 365 | 90.68% | 9.32% |
| Indica II | 203 | 82.27% | 17.73% |
| Indica Intermediate | 205 | 79.51% | 20.49% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121862123 | C->G | INTERGENIC | None |