Detailed information of SNP:
|
SNP ID:
sf0121869525(Gbrowse)
Chromosome: chr01 Position: 21869525 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 54.75% | 45.25% |
| All Indica | 783 | 24.39% | 75.61% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 366 | 14.48% | 85.52% |
| Indica II | 211 | 38.39% | 61.61% |
| Indica Intermediate | 206 | 27.67% | 72.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121869525 | C->T | LOC_Os01g38930(LOC_Os01g38930.1) | INTRON |