Detailed information of SNP:
|
SNP ID:
sf0121870098(Gbrowse)
Chromosome: chr01 Position: 21870098 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1318 | 90.97% | 9.03% |
| All Indica | 703 | 83.64% | 16.36% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 323 | 85.76% | 14.24% |
| Indica II | 194 | 83.51% | 16.49% |
| Indica Intermediate | 186 | 80.11% | 19.89% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121870098 | G->C | LOC_Os01g38930(LOC_Os01g38930.1) | INTRON |