Detailed information of SNP:
|
SNP ID:
sf0121992558(Gbrowse)
Chromosome: chr01 Position: 21992558 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.33% | 44.67% |
| All Indica | 799 | 23.78% | 76.22% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 5.33% | 94.67% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0121992558 | G->C | LOC_Os01g39110(LOC_Os01g39110.1) | Non-Synonymous SNP |