Detailed information of SNP:
|
SNP ID:
sf0122010794(Gbrowse)
Chromosome: chr01 Position: 22010794 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.63% | 10.37% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122010794 | C->T | INTERGENIC | None |