Detailed information of SNP:
|
SNP ID:
sf0122012678(Gbrowse)
Chromosome: chr01 Position: 22012678 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 95.69% | 4.31% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 459 | 88.45% | 11.55% |
| Aus | 59 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 321 | 98.44% | 1.56% |
| Tropical Japonica | 78 | 41.03% | 58.97% |
| Japonica Intermediate | 60 | 96.67% | 3.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122012678 | G->A | INTERGENIC | None |